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feat: vendor permission system source
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# Troubleshooting
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## Common Issues
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| Problem | Cause | Solution |
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| ----------------------------------------------------------------- | ----------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------- |
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| Config not applied (everything asks) | File not found or parse error | Verify the global config at `~/.pi/agent/extensions/pi-permission-system/config.json` (respects `PI_CODING_AGENT_DIR`); check for trailing commas |
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| Per-agent override not applied | Frontmatter parsing issue | Ensure `---` delimiters at file top; keep YAML simple; restart session |
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| Tool blocked as unregistered | Unknown tool name | Use a registered `mcp` tool for server tools: `{ "tool": "server:tool" }` |
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| `/skill:<name>` blocked | Deny policy or confirmation unavailable | Check merged `skill` policy (global/project/agent layers). `ask` still requires UI or forwarded confirmation. |
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| External file path blocked | `external_directory` is `ask` without UI or `deny` | Allow/ask the permission or keep file tools inside the active working directory. |
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| Spurious external-path prompt for `cd <subdir> && grep … ../path` | Relative path was resolved against cwd instead of the `cd` target | Fixed in current version — paths after a leading `cd <subdir> &&` are resolved against the cd target, matching actual shell behavior. |
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| Permission prompt is too verbose | Generic extension tool input is large | Built-in file tools are summarized automatically; third-party tools are capped to a bounded one-line JSON preview. |
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## Diagnostic Logging
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Enable `"debugLog": true` in your config to write verbose diagnostics to `logs/pi-permission-system-debug.jsonl`.
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On every session start, the extension emits a `config.resolved` entry to both logs listing the resolved config paths and whether each exists.
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This makes it easy to verify which files the extension actually loaded:
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```jsonc
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{
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"event": "config.resolved",
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"globalConfigPath": "/…/.pi/agent/extensions/pi-permission-system/config.json",
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"globalConfigExists": true,
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"projectConfigPath": "/…/my-project/.pi/extensions/pi-permission-system/config.json",
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"projectConfigExists": false,
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"agentsDir": "/…/.pi/agent/agents",
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"agentsDirExists": true,
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"projectAgentsDir": "/…/my-project/.pi/agents",
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"projectAgentsDirExists": false,
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"legacyGlobalPolicyDetected": false,
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"legacyProjectPolicyDetected": false,
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"legacyExtensionConfigDetected": false
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}
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```
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## Threat Model
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**Goal:** Enforce policy at the host level, not the model level.
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**What this stops:**
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- Agent calling tools it shouldn't use (e.g., `write`, dangerous `bash`)
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- Tool switching attempts (calling non-existent tool names)
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- Accidental escalation via skill loading
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- Unapproved path-bearing tool access outside the active working directory when `external_directory` is `ask` or `deny`
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**Limitations:**
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- If a dangerous action is possible via an allowed tool, policy must explicitly restrict it
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- This is a permission decision layer, not a sandbox — for true isolation see [Agent Sandboxes](https://engine.build/lab/agent-sandboxes)
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- The review log records bash command strings unredacted.
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Log files are created owner-only (`0600`), and values bound to a sensitive key name (`authorization`, `token`, `password`, …) are masked — but a secret embedded in a command string is not.
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Review-log values are shortened at `reviewLogFieldMaxWidth` (1000 characters by default), which bounds the file's growth but is a length cap, not redaction.
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See [Log file sensitivity](configuration.md#log-file-sensitivity) and [ADR 0010].
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[ADR 0010]: https://github.com/gotgenes/pi-packages/blob/main/packages/pi-permission-system/docs/decisions/0010-permission-log-secret-exposure.md
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